(주)엠디엑스케이는 고객의 연구 목적에 적합한 기술과 서비스를 제공합니다.
Shoreline biome의 all-in-one, easy-to-use microbiome assay kits로 lysis부터 바코드로
multiplexed된 결과분석까지 지원함으로써 빠르고 쉽게 high-quality microbiome data를 얻을 수 있습니다.
Patented (patent pending)
Lysis/DNA Purification
Novel and proprietary
primer design
Unique dual end barcodes
Shoreline Complete™ assay kits
Assay kits for illumina sequencing platform
Targeting either the V1–V3 or V4 region of the 16S rRNA gene
Assay kits for PacBio sequencing platform
Targeting either the full 16S rRNA gene or the 16S-ITS-23S region
SB analyzer software
Features
Strain level microbial identification using Shoreline Biome’s custom
Athena database and StrainID amplicon
Categorizes novel strains
Uniquely-curated database of well-annotated genomes
SBanalyzer software demultiplexes and maximizes usable reads
Intuitive analytical tool with point-and-click interface
Athena database from RefSeq genomes (currently contains
18,566 genomes and 77,212 16S-23S regions)
Advantages
Cell Lysis
일반적인 DNA preparation 방법으로
용해하기 어려운 미생물에도 적용가능
PCR Sequencing Targets
16S rRNA 미생물 유전자를 타겟으로 하여
multiplex primer 설계 및 검증, 많은 sample (>100)을
단일 런으로 동시에 sequencing할 수 있도록 최적화
Data Analysis
SBanalyzer software with Athena database
바코드로 샘플을 분류하고 Athena™ reference
database를 활용한 자체 software로 strain 수준으로
pylogenetic identification 가능
Features
Superior lysis with no bead beating
Low sample input for precious samples
Unique dual-ended barcodes maximizes usable reads
High fidelity single-step PCR
Improve accuracy & resolution for PacBio NGS
Athena™ reference database groups into taxonomic hierarchy
for strain level ID
Stool, skin, swab, tissue
Soil, insect, dairy
Microbiome-wide associations | Translational Research |
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HiFi Sequencing Advantage for Metagenome AssemblyHigher read accuracy drives assembly quality높은 정확도와 긴 read 길이의 HiFi 데이터는 metagenome assembly의오랫동안 지속.. 2021-01-27 |
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박테리아 균주를 strain 수준까지 식별하는 방법Identification and Classification of Novel Bacterial Strains 국내에서 미생물 유전체 연구를 진행하고 계시는 연구자분에게.. 2020-11-19 |
Identification and Classification of Novel Bacterial StrainsIdentification and Classification of Novel Bacterial Strainsmicrobiome 샘플에서 새로운 박테리아 균주를 식별, 분류한다는 것.. 2020-11-02 |
a convenient solution for microbiome researchers s..
Shoreline Rapid Prep is a fast and easy-to-use kit..
Ensure that no microbe is left behind with the Sho..
Simplified workflow and superb medium-resolution m..
Simplified workflow and superb medium-resolution m..
The fastest, easiest method to achieve strain-leve..